
Unfortunately most of them don't care or thoroughly brainwashed by government propagandas. They saw military operations in Papua as defence against "foreign backed separatism", many saw Papuans as backward and need to be "civilized" by Indonesian culture. And as in most colonialism there are Papuans that support the goverment because of fear, hoping better treatment for being loyal, or completely brainwashed.
These Papuans were arrested for attending a meeting that according to goverment "containing separatist agenda". Ironically this is what Dutch goverment used to do to Indonesian freedom fighters.
This guy is Frans Kaisiepo, during Indonesian war of independence he became infatuated by indonesia Nationalism through befriending Indonesia fighters and convinced that Papua should join Indonesia to stand against Imperialis .When the first appointed Governor of Papua, Elieser Jon Bonay symphatize with independence movement the Indonesia goverment replaced him with Frans Kaisiepo in which he proceed to make Papua part of Indonesia during the Act Of Free Choice which earn him awards. I don't know whether he ever regret his choice.
I always shake my head when my goverment aways among the first to condemn Israel when a Palestinian teen get shot (RIP) but act like what they do in Papua, East Timor, and Aceh are no big deal and say foreign nations should mind their own business.
Here they burning communist flag to celebrate the destruction of Indonesian Communist Party in which the armed force killed almost 500,000 men.
500,000 during communist purge
300,000 in East Timor
150,000 - 400,000 in Papua

and none of the perpetrators ever punished (some of them even become national heroes)